Prevalence and diversity of norovirus genogroups I and II in Hong Kong marine waters and detection by real-time PCR     

Yang N  Qi H  Wong MM  Wu RS  Kong RY 《Marine pollution bulletin》2012,64(1):164-168

Marine waters from six sites around Hong Kong with varying levels of sewage pollution were examined for noroviruses (NoVs) by PCR cloning and sequencing of a highly-variable N-terminal region of the VP1 capsid gene, at the ORF1-ORF2 junction of NoV. Phylogenetic analysis of genogroups GI- and GII-specific PCR clones obtained from different marine sites indicated that human NoV GI.1 and GII.4 strains are the most prevalent genotypes circulating in Hong Kong waters. GI- and GII-specific TaqMan-based real-time PCR assays targeting the ORF1-ORF2 junction of NoVs were used to quantify NoV particles in marine water samples in parallel with total Escherichia coli counts which were enumerated on TBX medium. No correlation of any significance between NoV and E. coli counts was observed which highlighted the inadequacy in using E. coli as a fecal indicator to predict the level of NoVs in marine waters to protect public health.  相似文献   

Biomarker-based paleo-record of environmental change for an eutrophic,tropical freshwater lake,Lake Valencia,Venezuela     

Yunping Xu  Rudolf Jaffé 《Journal of Paleolimnology》2008,40(1):179-194

The lipids in a sediment core from Lake Valencia, a hypereutrophic freshwater lake in Venezuela, are examined to understand environmental changes over the last ∼13,000 years. From the latest Pleistocene to the earliest Holocene, total organic carbon (TOC) substantially increased from 2.2 to 10%, while total organic carbon over total nitrogen (TOC/TN) decreased from as high as 34 to as low as 10. Correspondingly, the concentration of terrestrially derived triterpenoids markedly decreased, and the dominant n-alkane shifted from C₃₁ to C₂₃ or C₂₅. During the same period, algal biomarkers such as botryococcenes, dinosterol, isoarborinol, C₂₀ HBIs and 1,15C₃₂ keto-ol markedly increased in abundance. These changes suggested a greater contribution of algal organic matter at the onset of the Holocene, which was concurrent with increasing rainfall and the formation of a permanent lake (Lake Valencia) in the Aragua Valley, Venezuela. The age profile of Paq, a n-alkane based proxy, showed large oscillations (0.20–0.81), reflecting historical variations in source strength of submerged/floating vs. terrestrial/emergent OM inputs. An abrupt increase in tetrahymanol abundance at ∼7,260 cal years BP suggests the establishment of an oxic–anoxic boundary in the lake’s water column. After reaching its maximum abundance at ∼2,100 cal year BP, botryococcenes, a biomarker of Botryococcus braunii, gradually decreased to below the detection limit in the uppermost sediments, while different algal/microbial biomarkers such as diploptene, dinosterol and isoarborinol substantially increased. These different historical profiles of algal/microbial biomarkers reflect different responses of source organisms to environmental changes throughout this period. The δ¹³C determinations presented exceptionally enriched values for botryococcene isomers (−7.7 to −15.1‰), indicating the utilization of bicarbonate as carbon sources in an extremely productive ecosystem.  相似文献   

Subglacial emplacement of tills and meltwater deposits at the base of overdeepened bedrock troughs          下载免费PDF全文

Marius W. Buechi  Stephan M. Frank  Hans Rudolf Graf  John Menzies  Flavio S. Anselmetti 《Sedimentology》2017,64(3):658-685

The sedimentary infills of subglacially eroded bedrock troughs in the Alps are underexplored archives for the timing, extent and character of Pleistocene glaciations but may contain excellent records of the Quaternary landscape evolution over several glacial–interglacial cycles. The onset of sedimentation in these bedrock troughs is often reflected by diamicts and gravels directly overlying bedrock in the deepest basin segments. Subglacial or proglacial depositional environments have been proposed for these coarse‐grained basal units but their characteristics and origin remain controversial. This article presents results from drill cores that recovered a coarse‐grained basal unit in a major buried bedrock‐trough system in the Lower Glatt Valley, northern Switzerland. The excellent core recovery allowed a detailed study combining macroscopic, microscopic and geochemical methods and gives unprecedented insights into the transition from erosion to deposition in overdeepened bedrock troughs. These results show that the basal infill comprises diamicts, interpreted as subglacial tills, separated by thin sorted interbeds, originating from subglacial cavity deposition. The stacking of these units is interpreted to represent repeated switching between a coupled and decoupled ice–bed‐interface indicating an ever‐transforming mosaic of subglacial bed conditions. Decoupling in response to high basal water pressures is probably promoted by the confined subglacial hydraulic conditions resulting from the bedrock acting as aquitards, the narrow reverse sloping outlet and a large catchment area. While stratigraphic and lithological evidence suggests that erosion and the onset of basal sedimentation occurred during the same glaciation, different scenarios for the relative timing of infilling in relation to formation and glaciation of the bedrock trough are discussed. Overlying deltaic and glaciolacustrine sediments suggest deposition during subsequent deglaciation of the bedrock trough. The basal sediment characteristics are in agreement with previous reports in hydrogeological and seismic exploration and suggest the occurrence of similar basal successions in other subglacially overdeepened basins in the Alps and elsewhere.  相似文献   

Compound specific δD and δ13C analyses as a tool for the assessment of hydrological change in a subtropical wetland     

Ding He  William T. Anderson  Rudolf Jaffé 《Aquatic Sciences - Research Across Boundaries》2016,78(4):809-822

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Five new E′ centers and their 29Si hyperfine structures in electron-irradiated α-quartz     

Rudolf I. Mashkovtsev  Yuanming Pan 《Physics and Chemistry of Minerals》2012,39(1):79-85

Single-crystal electron paramagnetic resonance (EPR) spectra of fast-electron-irradiated quartz, after annealing at 120 and 200°C, reveal five new E′ type centers, herein labeled E ₅^￠ , E ₆^￠ , E ₇^￠ , E ₈^￠ , \textand E ₉^￠ E_{ 5}^{\prime } ,\,E_{ 6}^{\prime } ,\,E_{ 7}^{\prime } ,\,E_{ 8}^{\prime } ,\,{\text{and}}\,E_{ 9}^{\prime } . Centers E ₅^￠ , E ₇^￠ , \textand E ₉^￠ E_{ 5}^{\prime } ,\,E_{ 7}^{\prime } ,\,{\text{and}}\,E_{ 9}^{\prime } are characterized by the orientations of the unique principal g and A(²⁹Si) axes close to a short Si–O bond direction, hence representing new variants of the well-established E ₁^￠ E_{ 1}^{\prime } center. Centers E ₆^￠ E_{ 6}^{\prime } and E ₈^￠ E_{ 8}^{\prime } have the orientations of the unique principal g and A(²⁹Si) axes approximately along a long Si–O bond direction, similar to the E ₂^￠ E_{ 2}^{\prime } centers. Therefore, these new E′ type centers apparently arise from the removal of different oxygen atoms and represent variable local distortions around the oxygen vacancies.  相似文献   

Major human Hepatitis A virus genotype in Hong Kong marine waters and detection by real-time PCR     

Yang N  Chu DL  Wong MM  Qi H  Wu RS  Kong RY 《Marine pollution bulletin》2011,62(12):2654-2658

Marine waters from seven sites around Hong Kong with varying levels of sewage pollution were analyzed for Hepatitis A virus (HAV) by PCR cloning and DNA sequencing of the highly variable VP1/2A junction of the HAV genome. Phylogenetic analysis of 10 PCR clones from each of the HAV-positive marine sites indicated that human HAV genotype IB is the most widely distributed type in Hong Kong waters. A sensitive and quantitative TaqMan-based PCR method targeting the 5′-noncoding region (5′-NCR) of HAV was used to quantify HAV particles in marine water samples along with the total Escherichiacoli counts being enumerated on TBX medium for comparison. Our results showed that no correlation of any significance between HAV and E. coli counts was observed which underscores the inadequacy in using E. coli as a sanitary standard to predict the levels of HAV in marine waters.  相似文献   

Rainfall-induced landslide event of May 2010 in the eastern part of the Czech Republic   总被引：3，自引：2，他引：1  

Tom��? P��nek  Rudolf Br��zdil  Jan Klime?  Veronika Smolkov��  Jan Hradecky  Pavel Zahradn��?ek 《Landslides》2011,8(4):507-516

More than 150 landslides originated in the eastern part of the Czech Republic (region of the Flysch Outer Western Carpathians—hereinafter, OWC) due to soil saturation caused by antecedent precipitation and long lasting and intensive rainfalls on 16–18 May 2010 (>300 mm as measured by some stations). As a consequence, a multitude of small failures originated 88% of which was smaller than 10⁴ m². Most landslides are characterised as shallow (<10 m) or middle–deep (10–30 m) incipient (rather short travel) landslides, debris slides and soil slips spatially clustered to a geological domain underlain by rather weak thin-bedded flysch and unconsolidated Quaternary deposits. An exception to this is represented by a kilometre-long rockslide (∼2–3 mil m³) affecting tectonically weakened and weathered claystone/mudstone-dominated flysch on the southern slope of Mt. Girová (the Beskydy Mountains). The rockslide is one of the largest long runout landslides in the territory of the Czech Republic activated over the past few decades as it reaches the dimensions of the largest documented Holocene long runout landslides in the Czech part of the OWC. A majority of the May 2010 landslide events developed inside older (Holocene or historic) landslide terrains, which points to their spatial persistency and recurrent nature. In spite of the fact that the May 2010 landslide event was not as destructive as some previous landslide activisation in the OWC region (e.g. July 1997 event), it left many slope failures at the initial stage of their potential future reactivation.  相似文献   

Erratum to: Central European Journal of Geosciences, volume 3, number 2     

János Kovács  Szabolcs Á. Fábián  Gábor Varga  Karoly Németh  Corina Risso  Francisco Nullo  Gabor Kereszturi  Titusz Bugya  Szabolcs Á. Fábián  Noémi L. Görcs  István P. Kovács  Bertalan Radvánszky  Gabriella Barta  Rudolf Musil  Alice Ghiselli  Marzio Merazzi  Andrea Strini  Roberto Margutti  Michele Mercuriali  Rauf Gardashov  Daria Gushchina  Boris Dewitte  Martin Michálek  Marián Putiš  Christoph A. Hauzenberger  Jindřich Šancer  Martin Štrejbar  Aneta Maleňáková  George Migiros  George D. Bathrellos  Hariklia D. Skilodimou  Theodoros Karamousalis 《Central European Journal of Geosciences》2011,3(2):229-229

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A tribute to John Stuart Gray (1941-2007)     

Richardson B  Wu R  Shin P  Lam P  Fleddum A  Elliott M  Sheppard C 《Marine pollution bulletin》2008,56(1):1-4

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Multistage Variscan magmatism in the central Tauern Window (Austria) unveiled by U/Pb SHRIMP zircon data   总被引：2，自引：0，他引：2  

Roland Eichhorn  Georg Loth  Rudolf Höll  Fritz Finger  Andreas Schermaier  Allen Kennedy 《Contributions to Mineralogy and Petrology》2000,139(4):418-435

U/Pb SHRIMP ages of nine Variscan leucocratic orthogneisses from the central Tauern Window (Austria) reveal three distinct pulses of magmatism in Early Carboniferous (Visean), Late Carboniferous (Stephanian) and Early Permian, each involving granitoid intrusions and a contemporaneous opening of volcano-sedimentary basins. A similar relationship has been reported for the Carboniferous parts of the basement of the Alps further to the west, e.g. the “External massifs” in Switzerland. After the intrusion of subduction-related, volcanic-arc granitoids (374?±?10?Ma; Zwölferkogel gneiss), collisional intrusive-granitic, anatectic and extrusive-rhyolitic/dacitic rocks were produced over a short interval at ca. 340?Ma (Augengneiss of Felbertauern: 340?±?4?Ma, Hochweißenfeld gneiss: 342?± 5?Ma, Falkenbachlappen gneiss: 343?±?6?Ma). This Early Carboniferous magmatism, which produced relatively small volumes of melt, can be attributed to the amalgamation of the Gondwana-derived “Tauern Window” terrane with Laurussia–Avalonia. Probably due to the oblique nature of the collision, transtensional phenomena (i.e. volcano-sedimentary troughs and high-level intrusives) and transpressional regimes (i.e. regional metamorphism and stacked nappes with anatexis next to thrust planes) evolved contemporaneously. The magmas are mainly of the high-K I-type and may have been generated during a short phase of decompressional melting of lithospheric mantle and lower crustal sources. In the Late Carboniferous, a second pulse of magmatism occurred, producing batholiths of calc-alkaline I-type granitoids (e.g. Venediger tonalite: 296?±?4?Ma) and minor coeval bodies of felsic and intermediate volcanics (Heuschartenkopf gneiss: 299?±?4?Ma, Peitingalm gneiss: 300?±?5?Ma). Prior to this magmatism, several kilometres of upper crust must have been eroded, because volcano-sedimentary sequences hosting the Heu- schartenkopf and Peitingalm gneisses rest unconformably on 340-Ma-old granitoids. The youngest (Permian) period of magma generation contains the intrusion of the S-type Granatspitz Central Gneiss at 271?±?4?Ma and the extrusion of the rhyolitic Schönbachwald gneiss protolith at 279?±?9?Ma. These magmatic rocks may have been associated with local extension along continental wrench zones through the Variscan orogenic crust or with a Permian rifting event. The Permian and the above-mentioned Late Carboniferous volcano-sedimentary sequences were probably deposited in intra-continental graben structures, which survived post-Variscan uplift and Alpine compressional tectonics.  相似文献